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Protein Workshop 0.2.5
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Protein Workshop 0.2.5

Contents:

  • Installation
  • Tutorials
  • Architectural Overview
  • Quickstart
    • Pre-Training
    • Downstream
    • Downloading Datasets

Default Configs

  • Config Templates
  • Dataset
  • Models
  • Tasks
  • Features
  • Transforms
  • Metrics
  • Framework Components
    • Callbacks
    • Debug
    • Environment
    • Loggers
    • Hydra Configuration
    • Extras
  • ML Components
    • Trainer
    • Optimiser
    • Schedulers

API Reference

  • protein_workshop.train
  • protein_workshop.datasets
  • protein_workshop.models
  • protein_workshop.tasks
  • protein_workshop.features
  • protein_workshop.utils
  • protein_workshop.constants
  • protein_workshop.types
  • protein_workshop.metrics
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Framework Components#

  • Callbacks
    • Default
    • Training
      • Early Stopping (early_stopping)
      • Checkpointing (model_checkpoint)
      • Stop on NaN (stop_on_nan)
      • Exponential Moving Average (ema)
    • Logging
      • Model Summary (model_summary)
      • Rich Progress Bar (rich_progress_bar)
      • Learning Rate Monitor (learning_rate_monitor)
  • Debug
    • Default
  • Environment
  • Loggers
    • Wandb (wandb)
    • Tensorboard (tensorboard)
    • CSV (csv)
  • Hydra Configuration
    • Default
  • Extras
    • Default
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